Virus - CISMeF

Preferred Label : Virus;

NCIt synonyms : Viruses, General; Viruses;

NCIt definition : An infectious agent which consists of two parts, genetic material and a protein coat. These organisms lack independent metabolism, and they must infect the cells of other types of organisms to reproduce. Most viruses are capable of passing through fine filters that retain bacteria, and are not visible through a light microscope.;

Alternative definition : NCI-GLOSS: In medicine, a very simple microorganism that infects cells and may cause disease. Because viruses can multiply only inside infected cells, they are not considered to be alive.; NICHD: An infectious agent that comprises two parts: genetic material and a protein coat. These organisms lack independent metabolism, and they must infect the cells of other types of organisms to reproduce.; CDISC: Any infectious agent assigned to the superkingdom Virus.;

NCIt note : Some viruses have a third component, a lipid envelope that surrounds the protein coat which can protect the virus particle from environmental exposure.; The complete particle usually contains only DNA or RNA, not both, and is usually covered by a protein shell or capsid that protects the nucleic acid. They range in size from 15 um up to several hundred um. Classification of viruses depends upon characteristics of virions as well as upon mode of transmission, host range, symptomatology, and other factors.;

FDA table : Patient Code (Appendix B);

Taxon ID : 10239;

Codes from synonyms : CDR0000045941;

Details

Origin ID

C14283;

UMLS CUI

C0042776;

Automatic exact mappings (from CISMeF team)
- Virology [EDAM topic]
- Viruria (finding) [SNOMED CT concept]
- Virus [ACR pathology]
- Virus ID [EDAM data]
- Virus present (finding) [SNOMED CT concept]
- Viruses [OBI concept]
- Viruses [PASCAL theme]
- Viruses [UNESCO concept]
- as virus [SNOMED Notion]
- encephalitis virus, eastern equine [MeSH Descriptor]
- herpesvirus 1, cercopithecine [MeSH Descriptor]
- herpesvirus 4, human [MeSH Descriptor]
- isavirus [MeSH Descriptor]
- k virus [SNOMED Notion]
- reticuloendotheliosis virus [MeSH Descriptor]
- torque teno virus [MeSH Descriptor]
- viral load [MeSH Descriptor]
- virology [MeSH Qualifier]
- virus [OMIConto metadata]
- virus [COVID-19 Thesaurus concept]
- virus [Blood Transfusion thesaurus concept]
Currated CISMeF NLP mapping
- Virus [PASCAL descriptor]
- Virus [UMLS semantic type]
- Virus [Bloc CIM-11]
- Virus [LOINC component]
- Virus (organism) [SNOMED CT concept]
- Viruses [DeCS]
- virus [ICPS Descriptor]
- virus, nos [SNOMED Notion]
- viruses [MeSH Descriptor]
- viruses [MeSH concept]
False automatic mappings
- Virus (organism) [SNOMED CT concept]
- virus [ICPS Descriptor]
Semantic type(s)
- Virus [UMLS semantic type]
concept_is_in_subset
- ALL Adverse Events Table [NCIt concept]
- ALL Authorized Value Terminology [NCIt concept]
- AML Adverse Events Table [NCIt concept]
- AML Authorized Value Terminology [NCIt concept]
- CDISC SEND Biological Challenge Agent Category Response Terminology [NCIt concept]
- CDISC SEND Terminology [NCIt concept]
- Clinical Data Interchange Standards Consortium Terminology [NCIt concept]
- HL Adverse Events Table [NCIt concept]
- HL Authorized Value Terminology [NCIt concept]
- NICHD Terminology [NCIt concept]
- Pediatric Infectious Disease Terminology [NCIt concept]
is_organism_source_of_gene_product
- 65 kDa Phosphoprotein [NCIt concept]
- Adenovirus Death Protein [NCIt concept]
- Adenovirus E4 Protein [NCIt concept]
- Adenovirus Protein [NCIt concept]
- Apoptosis Inhibitor UL38 [NCIt concept]
- Capsid Protein [NCIt concept]
- DNA Polymerase Processivity Factor [NCIt concept]
- E1B Protein [NCIt concept]
- EBV Secreted Protein BARF1 [NCIt concept]
- ENV Protein [NCIt concept]
- Early E1A Protein [NCIt concept]
- Epstein-Barr Nuclear Antigen [NCIt concept]
- Epstein-Barr Nuclear Antigen 1 [NCIt concept]
- Epstein-Barr Nuclear Antigen 2 [NCIt concept]
- Epstein-Barr Nuclear Antigen 3 [NCIt concept]
- Epstein-Barr Virus Capsid Antigen [NCIt concept]
- Epstein-Barr Virus Early Antigen [NCIt concept]
- Epstein-Barr Virus Early Antigen Diffuse Component [NCIt concept]
- FLICE Inhibitory Protein [NCIt concept]
- Flu Matrix Protein [NCIt concept]
- GAG Protein [NCIt concept]
- HIV Envelope Protein gp120 [NCIt concept]
- HIV Envelope Protein gp41 [NCIt concept]
- HIV TAT Protein [NCIt concept]
- HIV p24 Antigen [NCIt concept]
- HIV-1 gp160 [NCIt concept]
- HIV-1 gp41 [NCIt concept]
- HIV-1 p24 [NCIt concept]
- HIV-1 p31 [NCIt concept]
- HIV-2 gp140 [NCIt concept]
- HIV-2 gp36 [NCIt concept]
- HPV Major Capsid Protein L1 [NCIt concept]
- HPV Minor Capsid Protein L2 [NCIt concept]
- HPV-11 Protein E6 [NCIt concept]
- HPV-11 Protein E7 [NCIt concept]
- HPV-16 Major Capsid Protein L1 [NCIt concept]
- HPV-16 Minor Capsid Protein L2 [NCIt concept]
- HPV-6 Protein E6 [NCIt concept]
- Hemagglutinin-Neuraminidase [NCIt concept]
- Hepatitis B X-Protein [NCIt concept]
- Hepatitis C Virus C33C Antigen [NCIt concept]
- Hepatitis C Virus Ns5 Antigen [NCIt concept]
- Hiv-1 Gp120 [NCIt concept]
- Hiv-1 Gp40 [NCIt concept]
- Hiv-1 P18 [NCIt concept]
- Hiv-1 P51 [NCIt concept]
- Hiv-1 P55 [NCIt concept]
- Hiv-1 P65 [NCIt concept]
- Human Cytomegalovirus Envelope Glycoprotein B [NCIt concept]
- Human Cytomegalovirus Envelope Pentamer Complex [NCIt concept]
- Integrase [NCIt concept]
- Latent Membrane Protein 1 [NCIt concept]
- Latent Membrane Protein 2 [NCIt concept]
- Latent Nuclear Antigen [NCIt concept]
- Measles Virus Nucleoprotein [NCIt concept]
- NEF Protein [NCIt concept]
- Nucleocapsid Protein [NCIt concept]
- Papillomavirus Protein E2 [NCIt concept]
- Papillomavirus Protein E4 [NCIt concept]
- Papillomavirus Transforming Protein E6 [NCIt concept]
- Papillomavirus Transforming Protein E7 [NCIt concept]
- Probable Protein E4, Human Papillomavirus Type 1 [NCIt concept]
- Probable Protein E4, Human Papillomavirus Type 11 [NCIt concept]
- Probable Protein E4, Human Papillomavirus Type 16 [NCIt concept]
- Probable Protein E4, Human Papillomavirus Type 6 [NCIt concept]
- Probable Protein E5, Human Papillomavirus Type 16 [NCIt concept]
- Protein E6, Human Papillomavirus Type 16 [NCIt concept]
- Protein E6, Human Papillomavirus Type 18 [NCIt concept]
- Protein E7, Human Papillomavirus Type 16 [NCIt concept]
- Protein E7, Human Papillomavirus Type 18 [NCIt concept]
- Protein E7, Human Papillomavirus Type 6 [NCIt concept]
- Protein E7, Human Papillomavirus Type 8 [NCIt concept]
- Putative Transcription Activator ORF50 [NCIt concept]
- Regulatory Protein E2, Human Papillomavirus Type 16 [NCIt concept]
- Regulatory Protein E2, Human Papillomavirus Type 18 [NCIt concept]
- Reovirus Capsid Protein [NCIt concept]
- SARS-CoV-2 3C-Like Proteinase Nsp5 [NCIt concept]
- SARS-CoV-2 Envelope Small Membrane Protein [NCIt concept]
- SARS-CoV-2 Membrane Protein [NCIt concept]
- SARS-CoV-2 Nucleoprotein [NCIt concept]
- SARS-CoV-2 RNA-Dependent RNA Polymerase Nsp12 [NCIt concept]
- SARS-CoV-2 Replicase Polyprotein 1ab [NCIt concept]
- SARS-CoV-2 Spike Glycoprotein [NCIt concept]
- SARS-CoV-2 Spike Protein S1 [NCIt concept]
- SARS-CoV-2 Spike Protein S2 [NCIt concept]
- T-Antigen [NCIt concept]
- T4 Endonuclease V [NCIt concept]
- Trans-Activator Protein BZLF1 [NCIt concept]
- Vesicular Stomatitis Indiana Virus Glycoprotein [NCIt concept]
- Viral G-Protein Coupled Receptor [NCIt concept]
- Viral Interleukin-6 Homolog [NCIt concept]
- Viral Oncogene Protein [NCIt concept]
- Viral Protease p15 [NCIt concept]
- Viral Protein [NCIt concept]
- Viral Protein Complex [NCIt concept]
- Zika Virus Envelope Protein E [NCIt concept]
- Zika Virus Genome Polyprotein [NCIt concept]
- Zika Virus RNA-Directed RNA Polymerase NS5 [NCIt concept]
- Zika Virus Small Envelope Protein M [NCIt concept]
- v-sis Platelet Derived Growth Factor, Beta Polypeptide [NCIt concept]

Keyword's position in hierarchy(ies) :

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