Preferred Label : Genome Variation Format;
NCIt related terms : GVF;
NCIt definition : A tab-delimited nine-column file to describe nucleotide sequence variation data. The
Genome Variation Format (GVF) is based on the Generic Feature Format Version 3 (GFF3)
but the GVF specifies additional text format constraints and allows for additional
attributes.;
NCIt note : The nine columns in a GVF file are as follows: 1) the sequence identifier where the
variant is located (seqid), 2) the source for the variation data (source), 3) the
type of variation as described by a code or term from the Sequence Ontology (type),
4) the integer representing the start coordinate of the sequence (start), 5) an integer
representing the end coordinate of the sequence (end), 6) the quality score for the
sequencing run (score), 7) the nucleotide strand where the variant was found (strand),
8) an integer representing the start of the next codon from the 5' end of the sequence
(phase) and 9) feature attributes (attributes). (https://github.com/The-Sequence-Ontology/Specifications/blob/master/gvf.md);
NCI Metathesaurus CUI : CL1773086;
Origin ID : C184761;
UMLS CUI : C5666794;
Semantic type(s)
- concept_is_in_subset
