Simple variant panel:-:Pt: Patient:-:

Preferred Label : Simple variant panel:-:Pt: Patient:-:;

LOINC status : TRIAL;

LOINC display name : Simple variant panel;

LOINC long common name : Discrete genetic variant panel;

LOINC short name : Simple var pnl;

LOINC description : This panel is used to report the information associated with a simple genetic variant, such as a single nucleotide change. It should not be used to report information related to structural variants.;

Details

Origin ID

81250-3;

UMLS CUI

C4255034;

Has component
- Simple variant [LOINC component]
- Simple variant panel [LOINC component]
Has system
- Patient [LOINC System]
- ^Patient [LOINC System]
Has time aspect
- Point in time (spot) [LOINC time aspect]
Panel of LOINC codes
- Allelic phase:Type:Pt:^Patient:Nom: [LOINC code]
- Allelic read depth:Num:Pt:^Patient:Qn: [LOINC code]
- Allelic state:Find:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Amino acid change type:Type:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Amino acid change:Find:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Associated phenotype:Find:Pt:^Patient:Nom: [LOINC code]
- Basis for allelic phase:Type:Pt:^Patient:Nom:* [LOINC code]
- CIGAR:ID:Pt:^Patient:Nom: [LOINC code]
- Chromosome region:ID:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- DNA change type:Type:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- DNA change:Find:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Gene identifier:ID:Pt:Bld/Tiss:Nom: [LOINC code]
- Genetic disease sequence variation interpretation:Imp:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Genetic variant assessment:Find:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Genomic DNA change:Find:Pt:^Patient:Nom: [LOINC code]
- Genomic reference sequence identifier:ID:Pt:Bld/Tiss:Nom: [LOINC code]
- Genomic source class:Type:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Haplotype name:ID:Pt:Bld/Tiss:Nom: [LOINC code]
- Reference nucleotide:Prid:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Sample variant allelic frequency:NFr:Pt:^Patient:Qn: [LOINC code]
- Simple variant:ID:Pt:^Patient:Nom: [LOINC code]
- Structural variant analysis method:Type:Pt:^Patient:Nom:* [LOINC code]
- Transcript reference sequence identifier:ID:Pt:Bld/Tiss:Nom: [LOINC code]
- Variable nucleotide:Prid:Pt:Bld/Tiss:Nom:Molgen [LOINC code]
- Variant category:Type:Pt:^Patient:Nom: [LOINC code]
- Variant exact start-end:ID:Pt:^Patient:Nom: [LOINC code]
- dbSNP:ID:Pt:^Patient:Nom: [LOINC code]
Part of panel
- Complex variant panel:-:Pt:^Patient:-: [LOINC code]
- Haplotype definition panel:-:Pt:^Patient:-: [LOINC code]
- Master HL7 genetic variant reporting panel:-:Pt:^Patient:-: [LOINC code]
Semantic type(s)
- Clinical Attribute [UMLS semantic type]

Keyword's position in hierarchy(ies) :

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